miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|229407105|gb|GO643295.1|GO643295 GGGGAGGGGAGCAGATCTTCATTGCCCCATCCGGTGTTCAGAAAGAGAGAATACAGCCAGAAGACATGTTTGTGTGTGAC
GTGGAAGAGAGGGACATCAGCTGTCCACCTGCCTGGAAGAACTTGAGGAAGAGCCAGTGTACACCGTTTTTTATGAACGC
CTATACTATGAGAGGGGCACAGGCAGTTATACACACCCACTCCAAGGCTGCTGTCATGGCAACACTGCTGTATCCTGGCA
AAGAGTTCAGGATAACACACCAGGAGATGATCAAGGGGATTCGTAAAGGCACCTCAGGCACCAACTATCGATACGACGAA
TGCCTGGTCGTGCCTATTGTTGAAAACACACCGGAGGAGATGAACTTGAGAGACGGGATGGCTCGGGCTATGGAGGAATA
CCCGGATTCATGTGCCGTCCTCGTCCGCCGACATGGGGTCTATGTCTGGGGCGAGTCGTGGGAAAAAGCCAAGACCATGT
GTGAATGCTACGACTACCCGTTTGACATGGCTGTGCAGATGAAGCAGTGTGGACTGGACCCTTCTGCCCTCCCAACAGAA
GAAAACGGAATAGTTCGACATTCACCGGTTGTTTGGTTTTTTTTTGTAAAAGAGACATGTGTTGCAGAAAGGTCAGTGGC
GTTCGATCAGGAGAGCGTGTTGTAATCATTTTGTCTTTCACGCCGGTCTGCTTCAAATTTGATGAAATTTGAAGGTAAGG
GCAGATCCAGGGTTGGAGGAGATTGAATGGCTGTGATCCAGAAGCATCTGGAGACAAGTCGCACAAAAAAAAACACACAG
TGGGACAAGTCTTGAATGAGCAGCTTGGCAAATCAAGGTCCTCGGGATCAAACGCTTTC




Most similar to sp|C1BJB1|MTNB_OSMMO

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|C1BJB1|MTNB_OSMMO Probable methylthioribulose-1-phosphate
           dehydratase OS=Osmerus mordax GN=apip PE=2 SV=1
          Length = 241

 Score =  346 bits (888), Expect = 1e-94
 Identities = 163/190 (85%), Positives = 177/190 (93%)
 Frame = +3

Query: 6   GEQIFIAPSGVQKERIQPEDMFVCDVEERDISCPPAWKNLRKSQCTPFFMNAYTMRGAQA 185
           G+QI+IAPSGVQKERIQPEDMFVCDV ERDIS PPAWK LRKSQCTP FMNAYTMR AQA
Sbjct: 52  GDQIYIAPSGVQKERIQPEDMFVCDVAERDISSPPAWKKLRKSQCTPLFMNAYTMRAAQA 111

Query: 186 VIHTHSKAAVMATLLYPGKEFRITHQEMIKGIRKGTSGTNYRYDECLVVPIVENTPEEMN 365
           VIHTHSKAAVMATLLYPGKEFRITHQEMIKGIRKG SGTNYRY++ LVVPI+ENTPEE +
Sbjct: 112 VIHTHSKAAVMATLLYPGKEFRITHQEMIKGIRKGNSGTNYRYNDTLVVPIIENTPEEQD 171

Query: 366 LRDGMARAMEEYPDSCAVLVRRHGVYVWGESWEKAKTMCECYDYPFDMAVQMKQCGLDPS 545
           L++ MA AMEEYP++CAVLVRRHGVYVWGE+WEKAKTMCECYDY FD+AVQMKQCGLDPS
Sbjct: 172 LKERMALAMEEYPEACAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVQMKQCGLDPS 231

Query: 546 ALPTEENGIV 575
           A+P+EE  IV
Sbjct: 232 AVPSEEIDIV 241